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Functional Characterization of Soybean Glyma04g39610 as a Brassinosteroid Receptor Gene and Evolutionary Analysis of Soybean Brassinosteroid Receptors

Identifieur interne : 000213 ( Main/Exploration ); précédent : 000212; suivant : 000214

Functional Characterization of Soybean Glyma04g39610 as a Brassinosteroid Receptor Gene and Evolutionary Analysis of Soybean Brassinosteroid Receptors

Auteurs : Suna Peng [République populaire de Chine] ; Ping Tao [République populaire de Chine] ; Feng Xu [République populaire de Chine] ; Aiping Wu [République populaire de Chine] ; Weige Huo [République populaire de Chine] ; Jinxiang Wang [République populaire de Chine]

Source :

RBID : PMC:4926431

Abstract

Brassinosteroids (BR) play important roles in plant growth and development. Although BR receptors have been intensively studied in Arabidopsis, the BR receptors in soybean remain largely unknown. Here, in addition to the known receptor gene Glyma06g15270 (GmBRI1a), we identified five putative BR receptor genes in the soybean genome: GmBRI1b, GmBRL1a, GmBRL1b, GmBRL2a, and GmBRL2b. Analysis of their expression patterns by quantitative real-time PCR showed that they are ubiquitously expressed in primary roots, lateral roots, stems, leaves, and hypocotyls. We used rapid amplification of cDNA ends (RACE) to clone GmBRI1b (Glyma04g39160), and found that the predicted amino acid sequence of GmBRI1b showed high similarity to those of AtBRI1 and pea PsBRI1. Structural modeling of the ectodomain also demonstrated similarities between the BR receptors of soybean and Arabidopsis. GFP-fusion experiments verified that GmBRI1b localizes to the cell membrane. We also explored GmBRI1b function in Arabidopsis through complementation experiments. Ectopic over-expression of GmBRI1b in Arabidopsis BR receptor loss-of-function mutant (bri1-5 bak1-1D) restored hypocotyl growth in etiolated seedlings; increased the growth of stems, leaves, and siliques in light; and rescued the developmental defects in leaves of the bri1-6 mutant, and complemented the responses of BR biosynthesis-related genes in the bri1-5 bak1-D mutant grown in light. Bioinformatics analysis demonstrated that the six BR receptor genes in soybean resulted from three gene duplication events during evolution. Phylogenetic analysis classified the BR receptors in dicots and monocots into three subclades. Estimation of the synonymous (Ks) and the nonsynonymous substitution rate (Ka) and selection pressure (Ka/Ks) revealed that the Ka/Ks of BR receptor genes from dicots and monocots were less than 1.0, indicating that BR receptor genes in plants experienced purifying selection during evolution.


Url:
DOI: 10.3390/ijms17060897
PubMed: 27338344
PubMed Central: 4926431


Affiliations:


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Le document en format XML

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<div type="abstract" xml:lang="en">
<p>Brassinosteroids (BR) play important roles in plant growth and development. Although BR receptors have been intensively studied in
<italic>Arabidopsis</italic>
, the BR receptors in soybean remain largely unknown. Here, in addition to the known receptor gene
<italic>Glyma06g15270</italic>
(
<italic>GmBRI1a</italic>
), we identified five putative BR receptor genes in the soybean genome:
<italic>GmBRI1b</italic>
,
<italic>GmBRL1a</italic>
,
<italic>GmBRL1b</italic>
,
<italic>GmBRL2a</italic>
, and
<italic>GmBRL2b</italic>
. Analysis of their expression patterns by quantitative real-time PCR showed that they are ubiquitously expressed in primary roots, lateral roots, stems, leaves, and hypocotyls. We used rapid amplification of cDNA ends (RACE) to clone
<italic>GmBRI1b</italic>
(
<italic>Glyma04g39160</italic>
), and found that the predicted amino acid sequence of GmBRI1b showed high similarity to those of AtBRI1 and pea PsBRI1. Structural modeling of the ectodomain also demonstrated similarities between the BR receptors of soybean and
<italic>Arabidopsis</italic>
. GFP-fusion experiments verified that GmBRI1b localizes to the cell membrane. We also explored
<italic>GmBRI1b</italic>
function in
<italic>Arabidopsis</italic>
through complementation experiments. Ectopic over-expression of
<italic>GmBRI1b</italic>
in
<italic>Arabidopsis</italic>
BR receptor loss-of-function mutant (
<italic>bri1-5 bak1-1D</italic>
) restored hypocotyl growth in etiolated seedlings; increased the growth of stems, leaves, and siliques in light; and rescued the developmental defects in leaves of the
<italic>bri1-6</italic>
mutant, and complemented the responses of BR biosynthesis-related genes in the
<italic>bri1-5 bak1-D</italic>
mutant grown in light. Bioinformatics analysis demonstrated that the six BR receptor genes in soybean resulted from three gene duplication events during evolution. Phylogenetic analysis classified the BR receptors in dicots and monocots into three subclades. Estimation of the synonymous (
<italic>K</italic>
<sub>s</sub>
) and the nonsynonymous substitution rate (
<italic>K</italic>
<sub>a</sub>
) and selection pressure (
<italic>K</italic>
<sub>a</sub>
/
<italic>K</italic>
<sub>s</sub>
) revealed that the
<italic>K</italic>
<sub>a</sub>
/
<italic>K</italic>
<sub>s</sub>
of BR receptor genes from dicots and monocots were less than 1.0, indicating that BR receptor genes in plants experienced purifying selection during evolution.</p>
</div>
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</div1>
</back>
</TEI>
<affiliations>
<list>
<country>
<li>République populaire de Chine</li>
</country>
<region>
<li>Guangdong</li>
</region>
<settlement>
<li>Jiangmen</li>
</settlement>
</list>
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<country name="République populaire de Chine">
<region name="Guangdong">
<name sortKey="Peng, Suna" sort="Peng, Suna" uniqKey="Peng S" first="Suna" last="Peng">Suna Peng</name>
</region>
<name sortKey="Huo, Weige" sort="Huo, Weige" uniqKey="Huo W" first="Weige" last="Huo">Weige Huo</name>
<name sortKey="Tao, Ping" sort="Tao, Ping" uniqKey="Tao P" first="Ping" last="Tao">Ping Tao</name>
<name sortKey="Wang, Jinxiang" sort="Wang, Jinxiang" uniqKey="Wang J" first="Jinxiang" last="Wang">Jinxiang Wang</name>
<name sortKey="Wu, Aiping" sort="Wu, Aiping" uniqKey="Wu A" first="Aiping" last="Wu">Aiping Wu</name>
<name sortKey="Xu, Feng" sort="Xu, Feng" uniqKey="Xu F" first="Feng" last="Xu">Feng Xu</name>
</country>
</tree>
</affiliations>
</record>

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